Transcript: lnc-CCKAR-16:1

Basic information

LNCipedia transcript ID: lnc-CCKAR-16:1 
LNCipedia gene ID: lnc-CCKAR-16
Location (hg19): chr4:28824866-28825833
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 968 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT095917
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.9139 non-coding 
CPAT coding probability 33.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCKAR-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-180C1.1.1-5:1
4.0 lnc-RP11-180C1.1.1-11:1
4.1 lnc-RP11-180C1.1.1-11:1
5.0 lnc-RP11-180C1.1.1-11:1
5.1 lnc-GABRA4-86:1
5.2 lnc-CCKAR-16:1