Transcript: lnc-CCKAR-1:12

Basic information

LNCipedia transcript ID: lnc-CCKAR-1:12 
LNCipedia gene ID: lnc-CCKAR-1
RefSeq ID: NR_134674
Location (hg19): chr4:26861246-26862221
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 495 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134674.1
Alternative gene names: LOC105374546


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -91.2619 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCKAR-1:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-AFAP1-150:8
5.1 lnc-AFAP1-150:8
5.2 lnc-CCKAR-1:12