Transcript: lnc-CCKAR-3:1

Basic information

LNCipedia transcript ID: lnc-CCKAR-3:1 
LNCipedia gene ID: lnc-CCKAR-3
Ensembl Gene ID: ENSG00000205830
Ensembl Transcript ID: ENST00000382007
Location (hg19): chr4:27209127-27220026
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2509 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007735; ENST00000382007; ENST00000382007.1; AC024132.1-001; OTTHUMT00000319578.1; NONHSAT095897
Alternative gene names: XLOC_003914; linc-CCKAR-7; ENSG00000205830; AC024132.1; ENSG00000205830.1; OTTHUMG00000150675.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.4971 non-coding 
CPAT coding probability 50.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCKAR-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCKAR-3:1
3.1 lnc-CCKAR-3:1
4.0 lnc-CCKAR-3:1
4.1 lnc-CCKAR-3:1
5.0 lnc-CCKAR-3:1
5.1 lnc-AFAP1-154:1
5.2 lnc-CCKAR-3:1