Transcript: lnc-CCNB1IP1-1:4

Basic information

LNCipedia transcript ID: lnc-CCNB1IP1-1:4 
LNCipedia gene ID: lnc-CCNB1IP1-1
Location (hg19): chr14:20811207-20811568
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 362 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259001.2|ENST00000554988.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -8.4336 non-coding 
CPAT coding probability 2.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCNB1IP1-1:4 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  3. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep
  4. Lipovich (2012), Activity-dependent human brain coding/noncoding gene regulatory networks., Genetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCNB1IP1-1:4
5.0 lnc-CCNB1IP1-1:4
5.1 lnc-TEP1-1:3
5.2 lnc-CCNB1IP1-1:4