Transcript: lnc-CCNE2-1:1

Basic information

LNCipedia transcript ID: lnc-CCNE2-1:1 
LNCipedia gene ID: lnc-CCNE2-1
Location (hg19): chr8:95804511-95806064
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1203 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000518613.1; KB-1608C10.2-001; OTTHUMT00000379349.1; NONHSAT127797
Alternative gene names: ENSG00000254307.1; KB-1608C10.2; OTTHUMG00000164590.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.7329 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCNE2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCNE2-1:1
4.0 lnc-CCNE2-1:1
4.1 lnc-CCNE2-1:1
5.0 lnc-CCNE2-1:1
5.1 lnc-ZNF706-145:1
5.2 lnc-CCNE2-1:1