Transcript: lnc-CCSAP-1:4

Basic information

LNCipedia transcript ID: lnc-CCSAP-1:4 
LNCipedia gene ID: lnc-CCSAP-1
Location (hg19): chr1:229378214-229406791
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7564 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000177788.5|MICT00000032488.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.3562 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSAP-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C1orf96-1:12
5.0 lnc-C1orf96-1:12
5.1 lnc-TRIM17-26:4
5.2 lnc-CCSAP-1:4