Transcript: lnc-CCT5-6:1

Basic information

LNCipedia transcript ID: lnc-CCT5-6:1 
LNCipedia gene ID: lnc-CCT5-6
Ensembl Gene ID: ENSG00000248537
Ensembl Transcript ID: ENST00000511310
Location (hg19): chr5:9363387-9422593
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 391 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511310.1; CTD-2201E9.4-001; OTTHUMT00000366002.1; NONHSAT100357
Alternative gene names: ENSG00000248537.1; CTD-2201E9.4; OTTHUMG00000161754.1; AC091906.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.9193 non-coding 
CPAT coding probability 4.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCT5-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCT5-6:1
4.0 lnc-CCT5-6:1
4.1 lnc-CCT5-6:1
5.0 lnc-CCT5-6:1
5.1 lnc-CARD6-283:1
5.2 lnc-CCT5-6:1