Transcript: lnc-CCT8L2-9:1

Basic information

LNCipedia transcript ID: lnc-CCT8L2-9:1 
LNCipedia gene ID: lnc-CCT8L2-9
Ensembl Gene ID: ENSG00000233866
Ensembl Transcript ID: ENST00000424770
Location (hg19): chr22:16062157-16063236
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 586 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029356; ENST00000424770; ENST00000424770.1; LA16c-4G1.3-001; OTTHUMT00000276574.1; NONHSAT083080
Alternative gene names: XLOC_014134; linc-IL17RA-7; ENSG00000233866; LA16c-4G1.3; ENSG00000233866.1; OTTHUMG00000140195.1; AC145543.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.3713 non-coding 
CPAT coding probability 10.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCT8L2-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL17RA-7:1
3.1 lnc-IL17RA-9:1
4.0 lnc-IL17RA-9:1
4.1 lnc-IL17RA-9:1
5.0 lnc-IL17RA-9:1
5.1 lnc-RTN4R-85:1
5.2 lnc-CCT8L2-9:1