Transcript: lnc-CD180-4:1

Basic information

LNCipedia transcript ID: lnc-CD180-4:1 
LNCipedia gene ID: lnc-CD180-4
Ensembl Gene ID: ENSG00000250421
Ensembl Transcript ID: ENST00000510621
Location (hg19): chr5:66995257-67198428
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 585 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510621; ENST00000510621.1; RP11-83M16.6-001; OTTHUMT00000368612.1; NONHSAT101817; ENST00000510621.5
Alternative gene names: ENSG00000250421; RP11-83M16.6; ENSG00000250421.1; OTTHUMG00000162350.1; ENSG00000250421.5; AC106798.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.324 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD180-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD180-3:1
3.1 lnc-CD180-4:1
4.0 lnc-CD180-4:1
4.1 lnc-CD180-4:1
5.0 lnc-CD180-4:1
5.1 lnc-TRIM23-28:1
5.2 lnc-CD180-4:1