Transcript: lnc-CD3D-5:1

Basic information

LNCipedia transcript ID: lnc-CD3D-5:1 
LNCipedia gene ID: lnc-CD3D-5
Ensembl Gene ID: ENSG00000254873
Ensembl Transcript ID: ENST00000534438
Location (hg19): chr11:118269621-118272610
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 477 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534438.1
Alternative gene names: ENSG00000254873.1; RP11-770J1.5; AP001267.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -111.2703 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD3D-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-770J1.5.1-1:2
4.1 lnc-RP11-770J1.5.1-1:2
5.0 lnc-RP11-770J1.5.1-1:2
5.1 lnc-SCN4B-14:1
5.2 lnc-CD3D-5:1