Transcript: lnc-CD58-2:2

Basic information

LNCipedia transcript ID: lnc-CD58-2:2 
LNCipedia gene ID: lnc-CD58-2
Location (hg19): chr1:116971673-116975990
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 513 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00000609; ENST00000449303.1; RP4-655J12.5-002; OTTHUMT00000097610.1
Alternative gene names: XLOC_000977; linc-NHLH2-2; ENSG00000230381.1; RP4-655J12.5; OTTHUMG00000014036.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.6059 non-coding 
CPAT coding probability 4.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD58-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP1A1OS-1:1
3.1 lnc-CD58-2:2
4.0 lnc-CD58-2:2
4.1 lnc-CD58-2:2
5.0 lnc-CD58-2:2
5.1 lnc-CD58-2:2
5.2 lnc-CD58-2:2