Transcript: lnc-CD80-1:1

Basic information

LNCipedia transcript ID: lnc-CD80-1:1 
LNCipedia gene ID: lnc-CD80-1
Location (hg19): chr3:119226932-119230323
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2789 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000509672
Alternative gene names: ENSG00000249939


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0629 non-coding 
CPAT coding probability 10.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD80-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD80-1:1
3.1 lnc-CD80-1:1
4.0 lnc-CD80-1:1
4.1 lnc-CD80-1:1
5.0 lnc-CD80-1:1
5.1 lnc-GOLGB1-29:1
5.2 lnc-CD80-1:1