Transcript: lnc-CD8B2-5:3

Basic information

LNCipedia transcript ID: lnc-CD8B2-5:3 
LNCipedia gene ID: lnc-CD8B2-5
Location (hg19): chr2:107318306-107384278
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 228 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00004869
Alternative gene names: XLOC_001616; linc-RGPD4-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.9198 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD8B2-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf40-4:2
3.1 lnc-C2orf40-5:2
4.0 lnc-C2orf40-5:2
4.1 lnc-C2orf40-5:2
5.0 lnc-C2orf40-5:2
5.1 lnc-SULT1C2-12:3
5.2 lnc-CD8B2-5:3