Transcript: lnc-CD9-1:1

Basic information

LNCipedia transcript ID: lnc-CD9-1:1 
LNCipedia gene ID: lnc-CD9-1
Location (hg19): chr12:6301563-6307505
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3965 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000504269; TCONS_00020230; NONHSAT026037
Alternative gene names: ENSG00000250621; XLOC_009631; linc-CD9-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.3565 non-coding 
CPAT coding probability 5.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD9-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD9-1:1
3.1 lnc-CD9-1:1
4.0 lnc-CD9-1:1
4.1 lnc-CD9-1:1
5.0 lnc-CD9-1:1
5.1 lnc-CLEC4D-84:1
5.2 lnc-CD9-1:1