Transcript: lnc-CDC42SE2-1:7

Basic information

LNCipedia transcript ID: lnc-CDC42SE2-1:7 
LNCipedia gene ID: lnc-CDC42SE2-1
Location (hg19): chr5:130588755-130591014
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 295 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00010090
Alternative gene names: XLOC_004548; linc-CDC42SE2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -403.072 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC42SE2-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LYRM7-1:2
3.1 lnc-LYRM7-1:2
4.0 lnc-CDC42SE2-1:7
4.1 lnc-CDC42SE2-1:7
5.0 lnc-CDC42SE2-1:7
5.1 lnc-PDLIM4-33:5
5.2 lnc-CDC42SE2-1:7