Transcript: lnc-CDC42SE2-1:9

Basic information

LNCipedia transcript ID: lnc-CDC42SE2-1:9 
LNCipedia gene ID: lnc-CDC42SE2-1
Location (hg19): chr5:130599359-130694955
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 458 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT103691
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -137.8302 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CDC42SE2-1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYRM7-1:7
4.0 lnc-CDC42SE2-1:9
4.1 lnc-CDC42SE2-1:9
5.0 lnc-CDC42SE2-1:9
5.1 lnc-PDLIM4-33:7
5.2 lnc-CDC42SE2-1:9