Transcript: lnc-CDH10-3:1

Basic information

LNCipedia transcript ID: lnc-CDH10-3:1 
LNCipedia gene ID: lnc-CDH10-3
Ensembl Gene ID: ENSG00000250524
Ensembl Transcript ID: ENST00000502861
Location (hg19): chr5:24882052-24885570
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009620; ENST00000502861; ENST00000502861.1; RP11-730N24.2-001; OTTHUMT00000366295.1; NONHSAT100763
Alternative gene names: XLOC_004756; linc-CDH10-4; ENSG00000250524; RP11-730N24.2; ENSG00000250524.1; OTTHUMG00000161887.1; AC106821.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -365.9573 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH10-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH10-3:1
3.1 lnc-CDH10-3:1
4.0 lnc-CDH10-3:1
4.1 lnc-CDH10-3:1
5.0 lnc-CDH10-3:1
5.1 lnc-CDH12-13:1
5.2 lnc-CDH10-3:1