Transcript: lnc-CDH23-1:2

Basic information

LNCipedia transcript ID: lnc-CDH23-1:2 
LNCipedia gene ID: lnc-CDH23-1
Location (hg19): chr10:73134945-73141151
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2253 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018230; NONHSAT013885
Alternative gene names: XLOC_008510; linc-CDH23


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.5794 non-coding 
CPAT coding probability 4.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH23-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC29A3-1:1
3.1 lnc-SLC29A3-1:1
4.0 lnc-SLC29A3-1:1
4.1 lnc-SLC29A3-1:1
5.0 lnc-SLC29A3-1:1
5.1 lnc-MTRNR2L5-135:1
5.2 lnc-CDH23-1:2