Transcript: lnc-CDH26-9:1

Basic information

LNCipedia transcript ID: lnc-CDH26-9:1 
LNCipedia gene ID: lnc-CDH26-9
Ensembl Gene ID: ENSG00000176659
Ensembl Transcript ID: ENST00000625080
Location (hg19): chr20:58630980-58648008
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2732 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625080.1
Alternative gene names: ENSG00000176659.7; C20orf197


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -29.0166 non-coding 
CPAT coding probability 30.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH26-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C20orf197-9:1
4.1 lnc-C20orf197-9:1
5.0 lnc-C20orf197-9:1
5.1 lnc-GNAS-15:1
5.2 lnc-CDH26-9:1