Transcript: lnc-CDH5-16:1

Basic information

LNCipedia transcript ID: lnc-CDH5-16:1 
LNCipedia gene ID: lnc-CDH5-16
Location (hg19): chr16:66083455-66095584
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 227 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_1352_chr16:66083454-66095584_lymphNode
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.9455 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH5-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH5-16:1
4.0 lnc-CDH5-16:1
4.1 lnc-CDH5-16:1
5.0 lnc-CDH5-16:1
5.1 lnc-NOL3-48:1
5.2 lnc-CDH5-16:1