Transcript: lnc-CDH9-2:4

Basic information

LNCipedia transcript ID: lnc-CDH9-2:4 
LNCipedia gene ID: lnc-CDH9-2
Location (hg19): chr5:27406639-27412768
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 295 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00010909
Alternative gene names: XLOC_004761; linc-CDH9-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.071 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH9-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH9-1:4
3.1 lnc-CDH9-2:4
4.0 lnc-CDH9-2:4
4.1 lnc-CDH9-2:4
5.0 lnc-CDH9-2:4
5.1 lnc-CDH12-46:4
5.2 lnc-CDH9-2:4