Transcript: lnc-CDH9-2:5

Basic information

LNCipedia transcript ID: lnc-CDH9-2:5 
LNCipedia gene ID: lnc-CDH9-2
Location (hg19): chr5:27406639-27410387
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 300 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010285; NONHSAT100795
Alternative gene names: XLOC_004761; linc-CDH9-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.071 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH9-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH9-1:5
3.1 lnc-CDH9-2:5
4.0 lnc-CDH9-2:5
4.1 lnc-CDH9-2:5
5.0 lnc-CDH9-2:5
5.1 lnc-CDH12-46:5
5.2 lnc-CDH9-2:5