Transcript: lnc-CDK2AP1-1:13

Basic information

LNCipedia transcript ID: lnc-CDK2AP1-1:13 
LNCipedia gene ID: lnc-CDK2AP1-1
Location (hg19): chr12:123743295-123745898
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1367 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235423.4|ENST00000542427.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.6425 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDK2AP1-1:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CDK2AP1-1:13
5.0 lnc-CDK2AP1-1:13
5.1 lnc-SBNO1-3:6
5.2 lnc-CDK2AP1-1:13