Transcript: lnc-CDKAL1-2:1

Basic information

LNCipedia transcript ID: lnc-CDKAL1-2:1 
LNCipedia gene ID: lnc-CDKAL1-2
Location (hg19): chr6:21354642-21355527
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 387 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011274; ENST00000426374; ENST00000426374.1; RP1-135L22.1-001; OTTHUMT00000039988.1; NONHSAT108033
Alternative gene names: XLOC_005195; linc-SOX4; ENSG00000227089; RP1-135L22.1; ENSG00000227089.1; OTTHUMG00000014341.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -250.1262 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDKAL1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDKAL1-1:1
3.1 lnc-CDKAL1-2:1
4.0 lnc-CDKAL1-2:1
4.1 lnc-CDKAL1-2:1
5.0 lnc-CDKAL1-2:1
5.1 lnc-GMNN-32:1
5.2 lnc-CDKAL1-2:1