Transcript: lnc-CDNF-1:1

Basic information

LNCipedia transcript ID: lnc-CDNF-1:1 
LNCipedia gene ID: lnc-CDNF-1
Location (hg19): chr10:14885630-14886747
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 467 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000439979.1; RP11-398C13.4-001; OTTHUMT00000046924.1; NONHSAT011552
Alternative gene names: ENSG00000235177.1; RP11-398C13.4; OTTHUMG00000017714.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 110.3402 coding 
CPAT coding probability 6.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CDNF-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDNF-1:1
4.0 lnc-CDNF-1:1
4.1 lnc-CDNF-1:1
5.0 lnc-CDNF-1:1
5.1 lnc-KLF6-168:1
5.2 lnc-CDNF-1:1