Transcript: lnc-CDS2-5:1

Basic information

LNCipedia transcript ID: lnc-CDS2-5:1 
LNCipedia gene ID: lnc-CDS2-5
Location (hg19): chr20:5041122-5043118
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1997 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT078297; FPKM1_group_18769_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.1843 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDS2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDS2-5:1
4.0 lnc-CDS2-5:1
4.1 lnc-CDS2-5:1
5.0 lnc-CDS2-5:1
5.1 lnc-PANK2-13:1
5.2 lnc-CDS2-5:1