Transcript: lnc-CDY1-1:3

Basic information

LNCipedia transcript ID: lnc-CDY1-1:3 
LNCipedia gene ID: lnc-CDY1-1
Location (hg19): chrY:28269867-28275354
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 392 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000400476.2; AC007965.12-001; OTTHUMT00000105034.1; NONHSAT147784
Alternative gene names: ENSG00000248451.1; AC007965.12; OTTHUMG00000045279.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.7455 non-coding 
CPAT coding probability 22.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDY1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRYP4-1:1
4.0 lnc-PRYP4-1:1
4.1 lnc-PRYP4-1:1
5.0 lnc-PRYP4-1:1
5.1 lnc-PRY-75:2
5.2 lnc-CDY1-1:3