Transcript: lnc-CEACAM20-1:7

Basic information

LNCipedia transcript ID: lnc-CEACAM20-1:7 
LNCipedia gene ID: lnc-CEACAM20-1
Location (hg19): chr19:45010211-45033548
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1530 bp
Exons: 12
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000424903; ENST00000424903.1; CEACAM20-203
Alternative gene names: ENSG00000176395; CEACAM20; ENSG00000176395.8; OTTHUMG00000151532.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.0498 non-coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CEACAM20-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF180-1:4
3.1 lnc-ZNF180-1:3
4.0 lnc-ZNF180-1:3
4.1 lnc-ZNF180-1:3
5.0 lnc-ZNF180-1:3
5.1 lnc-GPR4-28:7
5.2 lnc-CEACAM20-1:7