Transcript: lnc-CEACAM20-2:6

Basic information

LNCipedia transcript ID: lnc-CEACAM20-2:6 
LNCipedia gene ID: lnc-CEACAM20-2
Location (hg19): chr19:45248302-45250906
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2447 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027767; NONHSAT066717
Alternative gene names: XLOC_013356; linc-CEACAM20-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.6864 non-coding 
CPAT coding probability 6.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEACAM20-2:6 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF180-2:1
3.1 lnc-ZNF180-2:1
4.0 lnc-ZNF180-2:1
4.1 lnc-ZNF180-2:1
5.0 lnc-ZNF180-2:1
5.1 lnc-GPR4-23:6
5.2 lnc-CEACAM20-2:6