Transcript: lnc-CEBPB-13:2

Basic information

LNCipedia transcript ID: lnc-CEBPB-13:2 
LNCipedia gene ID: lnc-CEBPB-13
Location (hg19): chr20:48884035-48894964
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224397.1|ENST00000445003.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -311.4322 non-coding 
CPAT coding probability 23.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEBPB-13:2 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01272:6
5.0 LINC01272:6
5.1 lnc-SNAI1-14:2
5.2 lnc-CEBPB-13:2