Transcript: lnc-CELF2-2:1

Basic information

LNCipedia transcript ID: lnc-CELF2-2:1 
LNCipedia gene ID: lnc-CELF2-2
Location (hg19): chr10:11495945-11497386
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 503 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017789; ENST00000429092.1; RP11-89C21.3-001; OTTHUMT00000046763.1; NONHSAT011415
Alternative gene names: XLOC_008391; linc-ECHDC3-2; ENSG00000229763.1; RP11-89C21.3; OTTHUMG00000017671.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.7657 non-coding 
CPAT coding probability 2.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CELF2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CELF2-2:1
3.1 lnc-CELF2-2:1
4.0 lnc-CELF2-2:1
4.1 lnc-CELF2-2:1
5.0 lnc-CELF2-2:1
5.1 lnc-NPY4R2-392:1
5.2 lnc-CELF2-2:1