Transcript: lnc-CELF2-3:1

Basic information

LNCipedia transcript ID: lnc-CELF2-3:1 
LNCipedia gene ID: lnc-CELF2-3
Ensembl Gene ID: ENSG00000224788
Ensembl Transcript ID: ENST00000429539
RefSeq ID: NR_120636
Location (hg19): chr10:10100685-10105465
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017702; ENST00000429539; ENST00000429539.1; RP5-933E2.1-001; OTTHUMT00000046738.1; NONHSAT011351; NR_120636; NR_120636.1
Alternative gene names: XLOC_008389; linc-CELF2-2; ENSG00000224788; RP5-933E2.1; ENSG00000224788.1; OTTHUMG00000017655.1; AL138775.1; LOC101928298


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.9819 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CELF2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CELF2-3:1
3.1 lnc-CELF2-3:1
4.0 lnc-CELF2-3:1
4.1 lnc-CELF2-3:1
5.0 lnc-CELF2-3:1
5.1 lnc-NPY4R2-406:1
5.2 lnc-CELF2-3:1