Transcript: lnc-CEP44-1:15

Basic information

LNCipedia transcript ID: lnc-CEP44-1:15 
LNCipedia gene ID: lnc-CEP44-1
Ensembl Gene ID: ENSG00000251584
Ensembl Transcript ID: ENST00000507483
Location (hg19): chr4:175457791-175461935
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 792 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507483; ENST00000507483.1; RP11-440I14.3-001; OTTHUMT00000362240.1; NONHSAT099322
Alternative gene names: ENSG00000251584; RP11-440I14.3; ENSG00000251584.1; OTTHUMG00000160774.1; AC096751.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.5029 non-coding 
CPAT coding probability 7.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEP44-1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEP44-3:1
3.1 lnc-CEP44-3:1
4.0 lnc-CEP44-3:1
4.1 lnc-CEP44-1:15
5.0 lnc-CEP44-1:15
5.1 lnc-GALNTL6-27:15
5.2 lnc-CEP44-1:15