Transcript: lnc-CES5A-3:1

Basic information

LNCipedia transcript ID: lnc-CES5A-3:1 
LNCipedia gene ID: lnc-CES5A-3
Ensembl Gene ID: ENSG00000246379
Ensembl Transcript ID: ENST00000501259
RefSeq ID: NR_027078
Location (hg19): chr16:56126899-56225006
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2678 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000501259; ENST00000501259.1; RP11-461O7.1-001; OTTHUMT00000433290.1; NONHSAT142643; NR_027078; ENST00000501259.5; NR_027078.1
Alternative gene names: ENSG00000246379; AC007495.1; ENSG00000246379.2; RP11-461O7.1; OTTHUMG00000176719.1; ENSG00000246379.6; LOC283856


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.594 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CES5A-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CES5A-2:1
3.1 lnc-AMFR-4:1
4.0 lnc-CES5A-3:1
4.1 lnc-CES5A-3:1
5.0 lnc-CES5A-3:1
5.1 lnc-CFAP20-65:7
5.2 lnc-CES5A-3:1