Transcript: lnc-CES5A-3:7

Basic information

LNCipedia transcript ID: lnc-CES5A-3:7 
LNCipedia gene ID: lnc-CES5A-3
Ensembl Gene ID: ENSG00000261013
Ensembl Transcript ID: ENST00000565441
Location (hg19): chr16:56217638-56220218
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 795 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565441.1; CTD-2050B12.1-001; OTTHUMT00000433297.1; NONHSAT142656
Alternative gene names: ENSG00000261013.1; CTD-2050B12.1; OTTHUMG00000176722.1; AC079411.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.1177 non-coding 
CPAT coding probability 3.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CES5A-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMFR-3:2
4.0 lnc-CES5A-3:7
4.1 lnc-CES5A-3:7
5.0 lnc-CES5A-3:7
5.1 lnc-CFAP20-65:14
5.2 lnc-CES5A-3:7