Transcript: lnc-CFAP100-3:10

Basic information

LNCipedia transcript ID: lnc-CFAP100-3:10 
LNCipedia gene ID: lnc-CFAP100-3
Location (hg19): chr3:125934371-125966235
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 532 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006200; NONHSAT091653
Alternative gene names: XLOC_002796; linc-CCDC37-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4249 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFAP100-3:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC37-3:1
3.1 lnc-CCDC37-3:1
4.0 lnc-CCDC37-3:1
4.1 lnc-CCDC37-3:1
5.0 lnc-CCDC37-3:1
5.1 lnc-CFAP100-4:1
5.2 lnc-CFAP100-3:10