Transcript: lnc-CFAP52-2:2

Basic information

LNCipedia transcript ID: lnc-CFAP52-2:2 
LNCipedia gene ID: lnc-CFAP52-2
Location (hg19): chr17:9397314-9398337
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 692 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000583583.1; RP11-565F19.5-001; OTTHUMT00000441776.1; NONHSAT145590
Alternative gene names: ENSG00000265302.1; RP11-565F19.5; OTTHUMG00000178389.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.599 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFAP52-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR16-2:1
4.0 lnc-WDR16-2:1
4.1 lnc-WDR16-2:1
5.0 lnc-WDR16-2:1
5.1 lnc-CFAP52-2:1
5.2 lnc-CFAP52-2:2