Transcript: lnc-CFAP74-2:5

Basic information

LNCipedia transcript ID: lnc-CFAP74-2:5 
LNCipedia gene ID: lnc-CFAP74-2
Ensembl Gene ID: ENSG00000226969
Ensembl Transcript ID: ENST00000449154
Location (hg19): chr1:1980743-1981509
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 437 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000453; ENST00000449154.1; RP11-547D24.3-002; OTTHUMT00000098537.1; NONHSAT000388
Alternative gene names: XLOC_000676; linc-KIAA1751-2; ENSG00000226969.1; RP11-547D24.3; OTTHUMG00000041087.1; AL391845.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.7116 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFAP74-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf222-2:2
3.1 lnc-C1orf222-2:2
4.0 lnc-C1orf222-2:2
4.1 lnc-C1orf222-2:2
5.0 lnc-C1orf222-2:2
5.1 lnc-CLSTN1-119:5
5.2 lnc-CFAP74-2:5