Transcript: lnc-CFAP74-2:7

Basic information

LNCipedia transcript ID: lnc-CFAP74-2:7 
LNCipedia gene ID: lnc-CFAP74-2
Ensembl Gene ID: ENSG00000226969
Ensembl Transcript ID: ENST00000445600
Location (hg19): chr1:1980642-1981090
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 320 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445600.1; RP11-547D24.3-001; OTTHUMT00000098536.1
Alternative gene names: ENSG00000226969.1; RP11-547D24.3; OTTHUMG00000041087.1; AL391845.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.7116 non-coding 
CPAT coding probability 3.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFAP74-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf222-2:3
4.0 lnc-C1orf222-2:3
4.1 lnc-C1orf222-2:3
5.0 lnc-C1orf222-2:3
5.1 lnc-CLSTN1-119:7
5.2 lnc-CFAP74-2:7