Transcript: lnc-CFAP77-5:1

Basic information

LNCipedia transcript ID: lnc-CFAP77-5:1 
LNCipedia gene ID: lnc-CFAP77-5
Location (hg19): chr9:135230577-135232416
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1840 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000107245.1|HBMT00001475153.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.362 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFAP77-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C9orf171-5:1
5.0 lnc-C9orf171-5:1
5.1 lnc-RPL7A-18:1
5.2 lnc-CFAP77-5:1