Transcript: lnc-CFAP99-3:1

Basic information

LNCipedia transcript ID: lnc-CFAP99-3:1 
LNCipedia gene ID: lnc-CFAP99-3
Ensembl Gene ID: ENSG00000251148
Ensembl Transcript ID: ENST00000510632
Location (hg19): chr4:2297311-2320816
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 563 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510632.1; RP11-478C1.7-001; OTTHUMT00000360077.1; NONHSAT094781
Alternative gene names: ENSG00000251148.1; RP11-478C1.7; OTTHUMG00000160291.1; AL158068.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.7594 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFAP99-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-503N18.3.1-3:1
4.0 lnc-RP11-503N18.3.1-3:1
4.1 lnc-RP11-503N18.3.1-3:1
5.0 lnc-RP11-503N18.3.1-3:1
5.1 lnc-GPR78-93:1
5.2 lnc-CFAP99-3:1