Transcript: lnc-CGA-2:1

Basic information

LNCipedia transcript ID: lnc-CGA-2:1 
LNCipedia gene ID: lnc-CGA-2
Ensembl Gene ID: ENSG00000272008
Ensembl Transcript ID: ENST00000606274
Location (hg19): chr6:87860877-87865003
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4127 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606274.1
Alternative gene names: ENSG00000272008.1; RP11-393I2.4; AL139274.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.5655 non-coding 
CPAT coding probability 90.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CGA-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CGA-2:1
4.0 lnc-CGA-2:1
4.1 lnc-CGA-2:1
5.0 lnc-CGA-2:1
5.1 lnc-CNR1-13:2
5.2 lnc-CGA-2:1