Transcript: lnc-CGN-1:1

Basic information

LNCipedia transcript ID: lnc-CGN-1:1 
LNCipedia gene ID: lnc-CGN-1
Ensembl Gene ID: ENSG00000232536
Ensembl Transcript ID: ENST00000434112
Location (hg19): chr1:151512992-151534331
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 526 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434112.1; RP11-74C1.4-001; OTTHUMT00000257954.1; NONHSAT006398
Alternative gene names: ENSG00000232536.1; RP11-74C1.4; OTTHUMG00000133697.1; AL365436.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.833 non-coding 
CPAT coding probability 3.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CGN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CGN-1:1
4.0 lnc-CGN-1:1
4.1 lnc-CGN-1:1
5.0 lnc-CGN-1:1
5.1 lnc-PSMD4-9:1
5.2 lnc-CGN-1:1