Transcript: lnc-CHAC2-13:2

Basic information

LNCipedia transcript ID: lnc-CHAC2-13:2 
LNCipedia gene ID: lnc-CHAC2-13
Location (hg19): chr2:52565093-52588024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 815 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000042794.1|ENCT00000223600.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.9643 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHAC2-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CHAC2-13:2
5.0 lnc-CHAC2-13:2
5.1 lnc-TTC7A-36:2
5.2 lnc-CHAC2-13:2