Transcript: lnc-CHAD-3:2

Basic information

LNCipedia transcript ID: lnc-CHAD-3:2 
LNCipedia gene ID: lnc-CHAD-3
Ensembl Gene ID: ENSG00000250286
Ensembl Transcript ID: ENST00000509260
Location (hg19): chr17:48614660-48615801
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 717 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509260.1; RP11-94C24.8-002; OTTHUMT00000367572.1; NONHSAT054694
Alternative gene names: ENSG00000250286.1; RP11-94C24.8; OTTHUMG00000162154.1; AC021491.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 123.0066 coding 
CPAT coding probability 5.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHAD-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHAD-3:2
4.0 lnc-CHAD-3:2
4.1 lnc-CHAD-3:2
5.0 lnc-CHAD-3:2
5.1 lnc-CHAD-3:2
5.2 lnc-CHAD-3:2