Transcript: lnc-CHD1L-5:13

Basic information

LNCipedia transcript ID: lnc-CHD1L-5:13 
LNCipedia gene ID: lnc-CHD1L-5
Location (hg19): chr1:146644358-146651832
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6403 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237188.3|HBMT00000027382.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.6164 non-coding 
CPAT coding probability 99.92% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHD1L-5:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CHD1L-5:13
5.0 lnc-CHD1L-5:13
5.1 lnc-FCGR1A-43:6
5.2 lnc-CHD1L-5:13