Transcript: lnc-CHD1L-5:4

Basic information

LNCipedia transcript ID: lnc-CHD1L-5:4 
LNCipedia gene ID: lnc-CHD1L-5
Ensembl Gene ID: ENSG00000237188
Ensembl Transcript ID: ENST00000440377
Location (hg19): chr1:146644350-146646784
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1571 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000054; NONHSAT006001; ENST00000440377.2
Alternative gene names: XLOC_000385; linc-CHD1L-1; ENSG00000237188.3; RP11-337C18.8; AC242426.3; AC242426.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7641 non-coding 
CPAT coding probability 3.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD1L-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHD1L-1:1
3.1 lnc-CHD1L-1:1
4.0 lnc-CHD1L-5:4
4.1 lnc-CHD1L-5:4
5.0 lnc-CHD1L-5:4
5.1 lnc-FCGR1A-43:4
5.2 lnc-CHD1L-5:4