Transcript: lnc-CHD1L-5:6

Basic information

LNCipedia transcript ID: lnc-CHD1L-5:6 
LNCipedia gene ID: lnc-CHD1L-5
Location (hg19): chr1:146644806-146646726
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1057 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000440377; ENST00000440377.1; RP11-337C18.8-001; OTTHUMT00000100087.1
Alternative gene names: ENSG00000237188; RP11-337C18.8; ENSG00000237188.1; OTTHUMG00000042021.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7641 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD1L-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHD1L-1:2
3.1 lnc-CHD1L-1:2
4.0 lnc-CHD1L-5:6
4.1 lnc-CHD1L-5:6
5.0 lnc-CHD1L-5:6
5.1 lnc-FCGR1A-43:10
5.2 lnc-CHD1L-5:6