Transcript: lnc-CHD2-4:12

Basic information

LNCipedia transcript ID: lnc-CHD2-4:12 
LNCipedia gene ID: lnc-CHD2-4
Ensembl Gene ID: ENSG00000257060
Ensembl Transcript ID: ENST00000556519
Location (hg19): chr15:93856415-94042682
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1321 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556519.2
Alternative gene names: ENSG00000257060.6; RP11-266O8.1; AC091078.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -108.4589 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD2-4:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CHD2-4:12
4.1 lnc-CHD2-4:12
5.0 lnc-CHD2-4:12
5.1 lnc-TTLL13P-78:12
5.2 lnc-CHD2-4:12