Transcript: lnc-CHD2-4:3

Basic information

LNCipedia transcript ID: lnc-CHD2-4:3 
LNCipedia gene ID: lnc-CHD2-4
Ensembl Gene ID: ENSG00000257060
Ensembl Transcript ID: ENST00000554105
Location (hg19): chr15:93856331-94073643
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554105; ENST00000554105.1; RP11-266O8.1-004; OTTHUMT00000415157.1; NONHSAT049701; ENST00000554105.5
Alternative gene names: ENSG00000257060; RP11-266O8.1; ENSG00000257060.2; OTTHUMG00000171785.2; ENSG00000257060.6; AC091078.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.4589 non-coding 
CPAT coding probability 6.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD2-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHD2-4:3
3.1 lnc-CHD2-4:3
4.0 lnc-CHD2-4:3
4.1 lnc-CHD2-4:3
5.0 lnc-CHD2-4:3
5.1 lnc-TTLL13P-78:9
5.2 lnc-CHD2-4:3